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Patterns of whole exome sequencing in resected cholangiocarcinoma
Journal article   Open access   Peer reviewed

Patterns of whole exome sequencing in resected cholangiocarcinoma

Lucas W. Thornblade, Paul Wong, Daneng Li, Susanne G. Warner, Sue Chang, Mustafa Raoof, Jonathan Kessler, Arya Amini, James Lin, Vincent Chung, …
Cancers, Vol.13(16)
2021

Abstract

aged Article bile duct carcinoma BRAF gene cancer center cancer recurrence cancer surgery data analysis female FGFR gene gene gene mutation genetic fingerprinting human IDH1 gene IDH2 gene KRAS gene major clinical study male pathology retrospective study tertiary care center TP53 gene whole exome sequencing
Background: With minimally effective chemotherapy options, cholangiocarcinoma patients have 5 year survival rate of 10%. Tumor genetic profiling (TGP) can identify mutations susceptible to targeted therapies. We sought to describe the use of TGP and frequency of actionable results in resected cholangiocarcinoma. Methods: A retrospective review of patients undergoing curative intent resection at a comprehensive cancer center (2010–2020). Clinicopathologic and partial or whole exome sequencing data were reviewed. Results: 114 patients (mean age 65 ± 11 years, 45% female) underwent resection of cholangiocarcinoma (46% poorly differentiated, 54% intrahepatic, 36% node positive, 75% margin negative). Additionally, 32% of patients underwent TGP, yielding a mean of 3.1 actionable mutations per patient (range 0–14). Mutations aligned with a median of one drug per patient (range 0–11). Common mutations included TP53 (33%), KRAS (31%), IDH1/2 (14%), FGFR (14%), and BRAF (8%). Targeted therapies were administered in only 4% of patients (23% of eligible sequenced patients). After a median 22 months, 23% had recurrence and 29% were deceased. Discussion: TGP for cholangiocarcinoma has increased over the last decade with targeted therapies identified in most sequenced tumors, impacting treatment in a quarter of eligible patients. Precision medicine will play a central role in the future care of cholangiocarcinoma. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
url
https://doi.org/10.3390/cancers13164062View
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